Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQ-NKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSK-PFLEVMNEFNAKV
4QT4 Chain:A ((2-189))
VKMIVGLGNPGSKYEKTKHNIGFMAIDNIVKNLDVTFTDDKNFKAQIGSTFINHEKVYFVKPTTFMNNSGIAVKALLTYYNIDITDLIVIYDDLDMEVSKLRLRSKGSAGGHNGIKSIIAHIGTQEFNRIKVGIGRPLKGMTVINHVMGQFNTEDNIAISLTLDRVVNAVKFYLQENDFEKTMQKFNG--
General information:
TITO was launched using:
RESULT:
Template:
4QT4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113723 for 1511 contacts (-75.3/contact) +
2D Compatibility (PS) -19896 + (NN) -7458 + (LL) 256
1D Compatibility (HY) -20400 + (ID) 4450
Total energy: -165671.0 ( -109.64 by residue)
QMean score : 0.648
(partial model without unconserved sides chains):
PDB file :
Tito_4QT4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QT4-query.scw
PDB file :
Tito_Scwrl_4QT4.pdb
: