Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQHTIDQTQVIHTKPSALSYKEKTLVMGILNVTPDSFSDGGKYDSLDKALLHAKEMIDDGAHIIDIGGESTRPGAECVSEDEEMSRVIPVIERITKELGVPISVDTYKASVADEAVKAGASIINDIWGAKHDPKMASVAAEHNVPIVLMHNRPERNYNDLLPDMLSDLMESVKIAVEAGVDEKNIILDPGIGFAKTYHDNLAVMNKLEIFSGLGYPVLLATSRKRFIGRVLDLPPEERAEGTGATVCLGIQKGCDIVRVHDVKQIARMAKMMDAMLNKGGVHHG
1TWZ Chain:B ((34-294))
------------------LNLNEKTLIMGILNVTPD----GGSYNEVDAAVRHAKEMRDEGAHIIDIGGES-------VSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK------
General information:
TITO was launched using:
RESULT:
Template:
1TWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155365 for 2171 contacts (-71.6/contact) +
2D Compatibility (PS) -28222 + (NN) -21870 + (LL) 1428
1D Compatibility (HY) -31200 + (ID) 8400
Total energy: -243629.0 ( -112.22 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1TWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TWZ-query.scw
PDB file :
Tito_Scwrl_1TWZ.pdb
: