Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVA-GGDERQHSVYKGLKAVK-----QEKIVLVHDGARPFIKHEQIDELIAEAEQ-TGAAILAVPVKDTIKRVQ-DL-QVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
4ZDQ Chain:A ((8-236))
SRLFALIPCAGTGSRSGSALPKQYRTLAGRALLHYTLAAFDACSEFAQTLVVISPDDAHFDARRFAGLR----FAVRRCGGASRQASVMNGLIQLAEFGATDADWVLVHDAARPGITPALIRTLIGALKDDPVGGIVALPVADTLKRVPAGGDAIERTESRNGLWQAQTPQMFRIGMLRDAIQRAQLEGRDLTDEASAIEWAG-HTPRVVQGSLRNFKVTYPEDFDLAEAILAH-------
General information:
TITO was launched using:
RESULT:
Template:
4ZDQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107624 for 1777 contacts (-60.6/contact) +
2D Compatibility (PS) -24096 + (NN) -8830 + (LL) 228
1D Compatibility (HY) -12400 + (ID) 3850
Total energy: -156572.0 ( -88.11 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_4ZDQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZDQ-query.scw
PDB file :
Tito_Scwrl_4ZDQ.pdb
: