Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEIKGINHLLFSVSHLDTSIDFYQKVFGAKLLVKGRTTAYFDMNGIWLALNEEPDI--PRNDIKLSYTHIAFTIEDHEFEEMSAKLKRLHVNILPGRERDERDRKSIYFTDPDGHKFEFHTGTLQDRLRYYKQEK-THMHFYDETAF
1NKI Chain:B ((2-134))--LTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPAAD----YTHYAFGIAAADFARFAAQLRAHGVREWK-QNRSEGD--SFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRFA-----


General information:
TITO was launched using:
RESULT:

Template: 1NKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 499 -40556 -81.27 -311.97
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : -81.27
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.663

(partial model without unconserved sides chains):
PDB file : Tito_1NKI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NKI-query.scw
PDB file : Tito_Scwrl_1NKI.pdb: