Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
3JR5 Chain:A ((133-272))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDQTVVAGFGCIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
3JR5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67478 for 1003 contacts (-67.3/contact) +
2D Compatibility (PS) -14189 + (NN) -5398 + (LL) 1372
1D Compatibility (HY) -5600 + (ID) 2350
Total energy: -93643.0 ( -93.36 by residue)
QMean score : 0.621
(partial model without unconserved sides chains):
PDB file :
Tito_3JR5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JR5-query.scw
PDB file :
Tito_Scwrl_3JR5.pdb
: