Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTGVTRQKILITGASSGLGAGMARSFAAQGRDLALCARRTDRLTELKAELSQRYPDIKIAVAELDVNDHERVPKVFAELSDEIGGIDRVIVNAGIGKGARLGSGKLWANKATIETNLVAALVQIETALDMFNQRGSGHLVLISSVLGVKGVPGVKAAYAASKAGVRSLGESLRAEYAQRPIRVTVLEPGYIESEMTAKSASTMLMVDNATGVKALVAAIEREPGRAAVPWWPWAPLVRLMWVLPPRLTRRFA
2JAP Chain:D ((11-192))
----------LITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA--AGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHL-LRSKGTVVQMSSIAGRVNVRNA-AVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTEL---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123879 for 1511 contacts (-82.0/contact) +
2D Compatibility (PS) -19654 + (NN) -4605 + (LL) 6152
1D Compatibility (HY) -10800 + (ID) 3450
Total energy: -156236.0 ( -103.40 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_2JAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JAP-query.scw
PDB file :
Tito_Scwrl_2JAP.pdb
: