Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGGAVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGEC----QARSAKLGAHLH--QRLADLIGDGAVALRGLGWWADVDIE-RALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
4JEW Chain:A ((238-415))
LVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAF-----GSTYGGNPLACAVAGATFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSD----IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAV-----
General information:
TITO was launched using:
RESULT:
Template:
4JEW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114928 for 1146 contacts (-100.3/contact) +
2D Compatibility (PS) -17320 + (NN) -3616 + (LL) 536
1D Compatibility (HY) -11600 + (ID) 2900
Total energy: -149828.0 ( -130.74 by residue)
QMean score : 0.130
(partial model without unconserved sides chains):
PDB file :
Tito_4JEW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JEW-query.scw
PDB file :
Tito_Scwrl_4JEW.pdb
: