Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDDQPAVPDVDRLARSMLLLHGDHHDHNDSPEQHRTCGSWSKSRDFADDPQRAAAVREASRAERDRYLTSGLQPVDCRFCHVTVTVKRLGPGHTAVQWNTEASRRCAYFTELRARGGDSARTRSCPRLTDSIEHAVAEGYLEHHDPNR---
3J9O Chain:A ((2-135))
AKNKIPN----SRLMINYETNVDGVLKKKELPYRVLVVGDLSKGR--SVDAKKEFADREVRRVNNG--VDRVLEEMNISFDFEAPNFVSKDPSNLKVNYR---------IESVKDFRPD-AVAKKVPEIRALLEMKEILASFAKDIENNRNL
General information:
TITO was launched using:
RESULT:
Template:
3J9O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 10599 for 606 contacts (17.5/contact) +
2D Compatibility (PS) -13237 + (NN) -1324 + (LL) 1152
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -6710.0 ( -11.07 by residue)
QMean score : 0.174
(partial model without unconserved sides chains):
PDB file :
Tito_3J9O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J9O-query.scw
PDB file :
Tito_Scwrl_3J9O.pdb
: