Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVVGAVLPELKLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDWAGPSALIKSIGLRLGVPWYAYDTVTFSGEVTAVNDGLITVKVVGRNTLGDHVTATVELSMRDS
4W78 Chain:B ((1-126))
MTVVGAVLPELKLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDWAGPSALIKSIGLRLGVPWYAYDTVTFSGEVTAVNDGLITVKVVGRNTLGDHVTATVELSM---
General information:
TITO was launched using:
RESULT:
Template:
4W78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84496 for 932 contacts (-90.7/contact) +
2D Compatibility (PS) -13549 + (NN) -2504 + (LL) -4
1D Compatibility (HY) -19200 + (ID) 6300
Total energy: -126053.0 ( -135.25 by residue)
QMean score : 0.481
(partial model without unconserved sides chains):
PDB file :
Tito_4W78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W78-query.scw
PDB file :
Tito_Scwrl_4W78.pdb
: