Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSLLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDG-------CDCRKPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDC-QPVLVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ
2GMW Chain:A ((24-205))
-SVPAIFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAA--DWVLNSLADLPQAIKK
General information:
TITO was launched using:
RESULT:
Template:
2GMW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133582 for 1464 contacts (-91.2/contact) +
2D Compatibility (PS) -19686 + (NN) -15340 + (LL) 64
1D Compatibility (HY) -14400 + (ID) 3100
Total energy: -186044.0 ( -127.08 by residue)
QMean score : 0.677
(partial model without unconserved sides chains):
PDB file :
Tito_2GMW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GMW-query.scw
PDB file :
Tito_Scwrl_2GMW.pdb
: