Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKSRNPSLGQVSDFDIRLLRIFKTIVECGSFSAAESTLGLSRSAISLHMGDLEKRLGMRLCQRGRAGFALTDEGREVYRATQTLLAALEGFRAEVNDLHQHLRGELNIGIINNLVTLPQMRITHALSALKGQGPQVRINIGMTTPNEIELGVLDGHLHVGVVPLISP-LSGLEYLPLYDEHAQLYCSRGHALFERADGDIAVDEVLAADAVAPSYRLP----AE-A-QARHQELNNSASASDREGMAFLILTGNFIGYLPSHYAADWVAAGMLRPLLPERFHYAIALTIVTRKGRRPNLVLERFLEAVAVS |
2FYI Chain:A ((89-293)) | ----------------------------------------------------------------------------------------------------NDTSGVLTIATTHTQAR---YSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQIS--PLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQ-EEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAG |
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General information:
TITO was launched using:
| RESULT:
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Template: 2FYI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157050 for 1526 contacts (-102.9/contact) +
2D Compatibility (PS) -21588 + (NN) -8608 + (LL) 7324
1D Compatibility (HY) -4800 + (ID) 1700
Total energy: -186422.0 ( -122.16 by residue)
QMean score : 0.311
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