Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVSSASLAGKVAFVQGGSRGIGAAIVRRLAAEGASVAFTYVSSADKSRALAAEL--EGAGASILALHADSADAAALVAAVDEAAARFGRIDILVNNAAVLALGSVEELPLADFERTLAINVRSVFVATQAAVKHM--GDGGRVISIGSTNAERMPFAGGATYAMSKSALVGLTKGLARDLGPRGITVNNVQPGPVDTDMNPDDGD------FAEALKGLMALPRYARSEEIASFVAYLAGPEAAYITGASLTIDGGFSA
3RRO Chain:B ((9-248))
------NLEGKVALVTGASRGIGKAIAELLAERGAKVIGT-ATSESGAQAISDYLGDNGKGMALNVTNPESIEAV-LKAITDE----FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSV-VGTMGNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPR-----EIASAVAFLASPEAAYITGETLHVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
3RRO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117453 for 1985 contacts (-59.2/contact) +
2D Compatibility (PS) -25666 + (NN) -13803 + (LL) 1560
1D Compatibility (HY) -14000 + (ID) 4850
Total energy: -174212.0 ( -87.76 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_3RRO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RRO-query.scw
PDB file :
Tito_Scwrl_3RRO.pdb
: