Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDA-APYMQDFQVDTNGKDVMVLDVLALIK-EQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQ--NDTPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
1YQ3 Chain:B ((13-242))
--KFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTK--IYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATYKE
General information:
TITO was launched using:
RESULT:
Template:
1YQ3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110166 for 1725 contacts (-63.9/contact) +
2D Compatibility (PS) -24176 + (NN) -15795 + (LL) 752
1D Compatibility (HY) -24400 + (ID) 6350
Total energy: -180135.0 ( -104.43 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1YQ3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQ3-query.scw
PDB file :
Tito_Scwrl_1YQ3.pdb
: