Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------MYTLARQLLFKLSPETSHELSIDLIGAGGRLGLNRLLTPKPASLPVSVLGLEFPNPVGLAAGL-DKNGDAIDGFGQLG-FGFIEIGTVTPRPQP--GNPRPRLFRLPQAN-AIINRMGFNNHGVDHLLARVRAAKYR---------GVLGINIGKNFDTPVERAVDDYLICLDKVYADASYVTVNVSSPNTPGLRSLQFGDSLKQLLEALRQRQEALA-LRHGRRVPLAIKIAPDMTDEETALVAAALVEAGMDAVIATNTTLGREGVE-----GLPHGDEAGGLSGAPVREKSTHTVKVLAGELGGRLPIIAAGGITEGAHAAEKIAAGASLVQIYSGFIYKGPALIREAVDAIAALPRRN--------------- |
| 1D3G Chain:A ((1-367)) | MATGDERFYAEHLMPTLQGLLDPESAHRLAVRFTSLG------LLPFQDSDMLEVRVLGHKFRNPVGIAAG-FDKHGEAVDGLYKM-GFGFVEIGSVTPK--PQEGNPRPRVFRLPED-QAVINRYGFNSHGLSVVE-HRLRARQQKQAKLTEDGLPLGVNLGKNKTSV--DAAEDYAEGVRVLGPLADYLVVNVSSPNTA-------GLGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTV-SRPA-GLQGA---LRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRELEALLKEQGFGGVTDAIGADHRR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1D3G.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149116 for 2798 contacts (-53.3/contact) +
2D Compatibility (PS) -35127 + (NN) -26905 + (LL) 672
1D Compatibility (HY) -18000 + (ID) 6650
Total energy: -235126.0 ( -84.03 by residue)
QMean score : 0.516
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