Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
1YQN Chain:A ((3-157))
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGMGLGIACEAVALLI--
General information:
TITO was launched using:
RESULT:
Template:
1YQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116388 for 1307 contacts (-89.0/contact) +
2D Compatibility (PS) -17112 + (NN) -10955 + (LL) 244
1D Compatibility (HY) -17200 + (ID) 5450
Total energy: -166861.0 ( -127.67 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1YQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQN-query.scw
PDB file :
Tito_Scwrl_1YQN.pdb
: