Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
2VG3 Chain:B ((55-283))
---------LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFGS-------------
General information:
TITO was launched using:
RESULT:
Template:
2VG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145848 for 1827 contacts (-79.8/contact) +
2D Compatibility (PS) -25351 + (NN) -16827 + (LL) 1688
1D Compatibility (HY) -15200 + (ID) 4600
Total energy: -206138.0 ( -112.83 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_2VG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG3-query.scw
PDB file :
Tito_Scwrl_2VG3.pdb
: