Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPRTLAFVSTLL-----LAAFCA---LPAQADSFIMRLLNKPVPGGVAVVDLGEEGPPPRAFYQ-----GKPVLVVREEGRRWIA-------VVGIPLSTKPGPQKLEVRAATGNHEERFSVGSKHYREQRIT---LKNKRQVNPLPEDLKRIERELAEQTAAYRRFS----------------------PGLPSNLMLDKPVD-GPLSSPFGLRRFFNGEERNPHSGLDFAVPAGTPIKAPAAGKVILIGDYFFNGKTVFVDHGQGFISMFCHLSKIDVKLGQQVPRGGVLGKVGATGRATGPHMHWNVSLNDARVDPAIFIGAFQP------------------------ |
| 3SLU Chain:A ((8-371)) | GVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYRHLRADQSVHVLVGGDGGAREVQFFTDEDGERNLVALEKKGGIWRRSASEADMKVLPTLRSVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDSLYFHGQQVAAGDILAAEVVKGGTRHQAFYYRSDKGGNYYDEDGRVLQGFNIEPLVYTRISSPFGYRMHPILHTWRLHTGIDYAAPQGTPVRASADGVITFKGRKGGYGNAVMIRHANGVETLYAHLSAF-SQAQGNVRGGEVIGFVGSTGRSTGPHLHYEARINGQPVNPVSVALPTPELTQADKAAFAAQKQKADALLARLR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SLU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80854 for 2075 contacts (-39.0/contact) +
2D Compatibility (PS) -29519 + (NN) -7062 + (LL) -76
1D Compatibility (HY) -6400 + (ID) 3200
Total energy: -127111.0 ( -61.26 by residue)
QMean score : 0.270
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