Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPL-EAAGHSLGLCFHSLRAVTPQQIATVLAAGHDDLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGEERSARAFVQVLGELLD |
| 4F0L Chain:A ((11-458)) | QHFIHARQALLPDGWAENVRIGIA-GGVICSIETGVLAGPDDERQSVVVAGMANLHSHAFQYGMAGLAERRGPSADSFWSWREIMYKFALTMTPEQAEAVALRLYVDMLEAGFTRVGEFHYLHHDCDGTPYANLSEMADRIAAAATTAGMGLTLLPVFYAHSGFGGAAANEGQRRFINDPERFARLIEGCRKTLEGFEGAVLGVAPHSLRAVTPDELDSVTQLLPDA-PVHIHVAEQVKEVEDCIAWSGKRPVEWLLDHQDVTARWCLIHATHMSDEETKHMAKAGAIAGLCPVTEANLGDGTFNATEFAAAGGKFGIGSDSNVLIGIGDELRQLEYSQRLYHRARNVL-AANEGSTGRALFDGAVLGGNIAMGRPEDGLKKGASADFVSLDV--ERLPHAKGDVVLDGWIFAG-RAHVCDVWVRGVKQVEGGRHRLRDEAERAFQKALGELLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F0L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -313634 for 4131 contacts (-75.9/contact) +
2D Compatibility (PS) -48210 + (NN) -20132 + (LL) 84
1D Compatibility (HY) -35200 + (ID) 11500
Total energy: -428592.0 ( -103.75 by residue)
QMean score : 0.569
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