Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQATCARIARRFVWRNRMPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTETPRTTPAEARFLANEKARFGVRELTGGVLVSELRRGQGNGIGA-ATQVHVRYRGLLADGQVFDQS-ESAEWFALD----SVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
1Q1C Chain:A ((52-158))
------------------------------------------------------------------------------------------------------------------------------GVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK
General information:
TITO was launched using:
RESULT:
Template:
1Q1C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82287 for 707 contacts (-116.4/contact) +
2D Compatibility (PS) -10822 + (NN) -4086 + (LL) 10532
1D Compatibility (HY) -9200 + (ID) 1950
Total energy: -97813.0 ( -138.35 by residue)
QMean score : 0.441
(partial model without unconserved sides chains):
PDB file :
Tito_1Q1C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q1C-query.scw
PDB file :
Tito_Scwrl_1Q1C.pdb
: