Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHIRVAAIIRHQNKILLHTTK---NENYWTLPGGAVE-NELTKEGLQREMREELGEEVTIRELKIIAENRFVYRGEEMDSIEFYYIVELYPNSALLELSTFTKIEQFGQNGETDYELNFKWFEIDKVSEIEILPKFLQTELTQLSSDRIKHIQ
3CNG Chain:A ((40-162))
--KVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAVYSL--P----HISQVYMLFRAKLLD---L----DFFP---------GIESLEVRLFGEQEIPWNDIAFRVIHDPLKRYME-------
General information:
TITO was launched using:
RESULT:
Template:
3CNG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60344 for 934 contacts (-64.6/contact) +
2D Compatibility (PS) -13073 + (NN) -3061 + (LL) 2112
1D Compatibility (HY) -7200 + (ID) 1550
Total energy: -83116.0 ( -88.99 by residue)
QMean score : 0.465
(partial model without unconserved sides chains):
PDB file :
Tito_3CNG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CNG-query.scw
PDB file :
Tito_Scwrl_3CNG.pdb
: