Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNLDILYCKLAMCTTLLTERLRLQPVDLSNINDFLEFS-SDSETVFYMQRYKANTTEEAQMVLANVCMKSPLGIYAMIETESNKMIGIIELEIRD--EFSAEFGY-ILNKNYSGKGYMTEACSKLMSVGFEYLDLERIYARFDINNKKSGNVMERLGMKKEGELRHLAKNPKGEWKTRAYYSILKEEYFNKVNTK
1YRE Chain:A ((13-190))
------------LPITLQRGALRLEPLVEADIPELVSLAEANREALQY-MDGP-TRPDWYRQSLAEQR-EGRALPLAVR--LGVQLVGTTRFAEFLPALPACEIGWTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVLRNHRRLAGGRLDDTFVYSITDHEWPQVKAAL
General information:
TITO was launched using:
RESULT:
Template:
1YRE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59250 for 1299 contacts (-45.6/contact) +
2D Compatibility (PS) -18075 + (NN) -530 + (LL) 1828
1D Compatibility (HY) -2400 + (ID) 1650
Total energy: -80077.0 ( -61.65 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_1YRE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YRE-query.scw
PDB file :
Tito_Scwrl_1YRE.pdb
: