Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRHFETTRRIVIKVGTSSLVQTS-GKINLSKIDHLAFVISSLMNRGMEVILVSSGAMG---FGLDILKMDKRPQEISQQQAVSSVGQVAMMSLYSQIFSHYQTHVSQILLTRDVVVFPESLQNVTNSFESLLSMGILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLFDKNPNIYDDAVLRSHVSEITDDIIKSAGGAGSKFGTGGMLSKIKSAQMVFDNNGQMILMNGANPRDILKVLDGHNIGTYFAQGK |
3EK6 Chain:A ((1-239)) | --MSELSYRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRV--TGDHMGMLATVINALAM---QDALEKLGAKVRVM--SAIKINDVCEDFIR-RRAIRHLEKGRIAIFAA-----GT---GN-PFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDE--VIM--------QGLEVMDT--AAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQGRS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EK6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136508 for 1912 contacts (-71.4/contact) +
2D Compatibility (PS) -26075 + (NN) -13005 + (LL) 1232
1D Compatibility (HY) -4400 + (ID) 2550
Total energy: -181306.0 ( -94.83 by residue)
QMean score : 0.418
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