Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIKLVATDMDGTFLDENGTYDKKRLANVLKKFKEQGIVFTAASGRSLLSLEQLFADFRDQMAFIAENGSAAVLF-NRLAYEQHLSREQYLDIIDHLSKSPYMENNEYVLSGKDGAYILSDANPDYIEFITHYYDNLQKVS--HFEDVD-DIIFKVTANFT-EETVRQAEEWVNQAIP-YTTAVTTGFKSIDIILSSVNKRNGLEHLCEQYGIRAEEVLSFGDNINDLEMLEWSGKAIATENARPEVKEIADC--IIGHHNNQAVMAYLESMVD |
| 3PGV Chain:A ((21-283)) | -YQVVASDLDGTLLSPDHFLTPYA-KETLKLLTARGINFVFATGRHYIDVGQIRDNLGIRSYMITSNGARVHDSDGQQIFAHNLDRDIAADLFEIVRNDP---KIVTNVYREDEWYMNRHR---------FFKEAVFNYKLYEPGELDPQGISKVFFTCEDHEHLLPLEQAMNARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQRLKDLHPELEVIGSNADDAVPRYLRKLYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PGV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95492 for 2103 contacts (-45.4/contact) +
2D Compatibility (PS) -27477 + (NN) -11262 + (LL) 1280
1D Compatibility (HY) -14800 + (ID) 2800
Total energy: -150551.0 ( -71.59 by residue)
QMean score : 0.479
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