Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------MATYETFAAVYDAVMDD--TLYDKWTDFSLRHFPK-GKKKLLELACGTGIQSVRFSQAGYAVTGLDLSGDMLKLAKKRAT-----SAHQSIQFIEGNMLDLSNV----GKYDLITCYSDSICYMQD----EVEVGDVFIEVYKALEENGVFIFDVHSTYQTDK---VFPGYSYHENADDFAMVWDTYE--DDAPHSIVHELTFFV--QEEDGRFTRHDEVHEERTYDILTYDILLEQA--GFKDVKVYADFEDKKPTATSARWFFVAHK---- |
| 1XVA Chain:A ((1-292)) | VDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -98067 for 1840 contacts (-53.3/contact) +
2D Compatibility (PS) -25373 + (NN) 572 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 2500
Total energy: -134968.0 ( -73.35 by residue)
QMean score : 0.442
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