Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKILFFGEPLIRITPKENDYFADSISTKLFYGGSEVNTARALQGFGQDTKLLSALPNNPIGNSFLQFLKAQGIDTHSIQW-VGERVGLYFLEDSF--ACRKGEVVYDRDHSSLHDFRINQIDFDQLFEGVSLFHFSGITLSLDESIQEITLLLLKEAKKREITISLDLNFRSKLIS-PKNAKILFSQFATFAD--ICFGIEPLMVDS-QDTTFFNRDEATIEDVKERMISLINHFDFQVIFHTKRLQDEWGRNHYQAYIANRKQEFVTSKEITTAVNQRIGSGDAFVAGALYQLLQHSDSKTVIDFAVASASLKCALEGDNMFETV-TAVNKVLNQSKDIIR |
| 2V78 Chain:A ((2-312)) | -VDVIALGEPLIQFNSFNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPM-KSELVYYRKGSAGSRLSPEDINEN-YVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLWSSLEKAKETILSILKKYDIEVLITDPDDTKILLDVT-----------DPDEAYRKYKEL-GVK-----VLLYKLGSKG---AIAYKDN-VKAFKDAYKVPVEDPTGAGDAMAGTFVSLYLQGKDIEYSLAHGIAASTLVITVRGDNELTPTLEDAERFLNEFK---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2V78.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97431 for 2791 contacts (-34.9/contact) +
2D Compatibility (PS) -31922 + (NN) -8221 + (LL) 3424
1D Compatibility (HY) -10800 + (ID) 3600
Total energy: -148550.0 ( -53.22 by residue)
QMean score : 0.445
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