Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSC-TMLAVMASGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAISGQ--ICRCTGYTTIVRSIQWAAAHQTVKAQS
4US9 Chain:A ((2-154))
IQKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVGQPE-NLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAA--------
General information:
TITO was launched using:
RESULT:
Template:
4US9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133558 for 1226 contacts (-108.9/contact) +
2D Compatibility (PS) -15767 + (NN) -4089 + (LL) 536
1D Compatibility (HY) -12400 + (ID) 3100
Total energy: -168378.0 ( -137.34 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4US9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4US9-query.scw
PDB file :
Tito_Scwrl_4US9.pdb
: