Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDSGGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN
1YF4 Chain:A ((1-223))
-----------------------IVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN
General information:
TITO was launched using:
RESULT:
Template:
1YF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148499 for 1910 contacts (-77.7/contact) +
2D Compatibility (PS) -24749 + (NN) -12434 + (LL) 2020
1D Compatibility (HY) -28800 + (ID) 9050
Total energy: -221512.0 ( -115.97 by residue)
QMean score : 0.855
(partial model without unconserved sides chains):
PDB file :
Tito_1YF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YF4-query.scw
PDB file :
Tito_Scwrl_1YF4.pdb
: