Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPPCQPQRPLLLLLLLLACQPQVPSAQVMDFLFEKWKLYGDQCHHNLSLLPPPTELVCNRTFDKYSCWPDTPANTTANISCPWYLPWHHKVQHRFVFKRCGPDGQWVRGPRGQPWRDASQCQMDGEEIEVQKEVAKMYSSFQVMYTVGYSLSLGALLLALAILGGLSKLHCTRNAIHANLFASFVLKASSVLVIDGLLRTRYSQKIGDDLSVSTWLSDGAVAGCRVAAVFMQYGIVANYCWLLVEGLYLHNLLGLATLPERSFFSLYLGIGWGAPMLFVVPWAVVKCLFENVQCWTSNDNMGFWWILRFPVFLAILINFFIFVRIVQLLVAKLRARQMHHTDYKFRLAKSTLTLIPLLGVHEVVFAFVTD-----EHAQGTLRSAKLFFDLFLSSFQGLLVAVLYCFLNKEVQSELRRRWHRWRLGKVLWEERNTSNHRASSSPGHGPPSKELQFGRGGGSQDSSAETPLAGGLPRLAESPF |
1U19 Chain:A ((4-349)) | MNGTEGPNFYV---------PFSNKTGVVRSPFEAPQYY----------LAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRT---------------------------------------PLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFG---PTGCNLEGFFATLGGEIALWSLVVLAIERYVVVC------KPMSNFRFGENHAIMGVAFTWVMALACA----------------------APPLVGWSRYIPEGMQC--SCGIDYYTPHEET--------NNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC----------------------GKNP------LGDDEASTTVSKTETSQVAPA------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -196289 for 2819 contacts (-69.6/contact) +
2D Compatibility (PS) -33687 + (NN) -314 + (LL) 8204
1D Compatibility (HY) 5600 + (ID) 900
Total energy: -217386.0 ( -77.11 by residue)
QMean score : 0.193
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