Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MNGMNHSVVSEFVFM--GLTNSREIQLLLFVFSLLFYF-ASMMGNLVIVFTVTMDAHLHS-PMYFLLANLSIIDMAFCSITAPKMICDIFKKHKAISFRGCITQIFFSHA-LGGTEMVLLIAMAFDRYMAICKPLHYLTIMSPRMCLYFLATSSIIGLIHSLVQLVFVVDLPFCGPNIFDSF-YCDLPRLLRLACTNTQELEFMVTV-NSGL-ISVGSFVLLVISYIFILFTVWKHSSG-GLAKALSTLSAHVTVVILFFGPLMFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTFRN-KDMKVAMRRLCSRLAHFTKIL |
| 4QIK Chain:A ((4-313)) | GVEDTKHYEEAKKCVEELALYLKPLSSARGVGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAVRA---RGCQ---FLGPAMQ--EEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRA----------SCFKSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQ-------SHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL-ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4QIK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -273643 for 2121 contacts (-129.0/contact) +
2D Compatibility (PS) -29074 + (NN) -7364 + (LL) 1660
1D Compatibility (HY) 2000 + (ID) 2350
Total energy: -308771.0 ( -145.58 by residue)
QMean score : 0.216
|
|
|