Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
1I54 Chain:A ((8-102))
-----------------------------------------------------------------------KTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQ-AEGYSYTDANKSKGIVWNNDTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS-------
General information:
TITO was launched using:
RESULT:
Template:
1I54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32056 for 646 contacts (-49.6/contact) +
2D Compatibility (PS) -9897 + (NN) -1563 + (LL) 6628
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -46488.0 ( -71.96 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_1I54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1I54-query.scw
PDB file :
Tito_Scwrl_1I54.pdb
: