Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELESLFQDIMDGFAVYNNKVAVAVSGGIDSIVLLHLITSWAEKRQCPPPIALAVNHGLRPESQEEVEFVVSYAKELGV-KKSFILNWKRQN-----------------IKGNVQSQARKARYELLTEWCKNNDVKHLFIAHHKDDQAETFLLRLERGSGLDGLSSMDYKSSLNGVCMLRPLLSF-------SRSRIKKYADFYRLKWVEDRSNQSLKYKRTLYRNLLKASGNQEILTERICLTTLHIKRATKALMHYTRLAFNDCVNVHDLGYIEIKLSEFYKLPEEIALRLLLYSIMVISSKHYKPRYNSLIAIFNKVLQKDNDVHCTLSGCKIRKYGESILIIRESSKIQEISVSLPLNAPIEWDNRFSCTILGNQECSVTIAPLKKTQKIPKFLKDYDCCPEVFYSLPVVLKDGKVLAYLHLNHDRKNINGDEVQCIINSTIKQNLVILAGI |
| 1VL2 Chain:A ((2-172)) | -----------------KEKVVLAYSGGLDTSVILKWLCEK-----GFDVIAYVANVGQK----DDFVAIKEKALKTGASK-VYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFEL--------TYAAL-----NPNLKVISPWKDPEFLAKFK--TDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDPAHIPDEDVFTWTVSPKDAPDEETLLEIHFENGIPVKVVNLKDGTEKTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMDKEVMHLRDMLAPKFAELIYNGFWFSPEMEFLLAAFRKAQENVTGKVTVSIYKGNVMPVARYSPYSLYNPGGFDATDSKGFINIHALRLKVHQLVKKGYQR---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VL2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112957 for 1090 contacts (-103.6/contact) +
2D Compatibility (PS) -15745 + (NN) -7211 + (LL) 3592
1D Compatibility (HY) 0 + (ID) 1150
Total energy: -133471.0 ( -122.45 by residue)
QMean score : 0.666
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