Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKILIVNSIYYTEIANLLLEGATDKL----KGSNASYNVIEVPGAFEIPAAILFAVKSKHFNYDGYLALGCVIRGETDHYQYICKGVIKGLNEVVMHNTVPLGMGVITADSKDKALVRADKDKKNIGGRTASAVLHMIDLYNKLR
3MK3 Chain:Z ((13-154))
-ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGK--YDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAI-
General information:
TITO was launched using:
RESULT:
Template:
3MK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115853 for 1164 contacts (-99.5/contact) +
2D Compatibility (PS) -15227 + (NN) -10718 + (LL) 360
1D Compatibility (HY) -7200 + (ID) 2450
Total energy: -151088.0 ( -129.80 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_3MK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MK3-query.scw
PDB file :
Tito_Scwrl_3MK3.pdb
: