Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQATYASISLPGISSVEDVLEDARFGKLFILVDDENRENEGDLIVLAEKLKPEHVAFMVRYGTGIVFLAMTRLHMGRLGLEFMRRSNIDEKLTPHTAFTTSIDARYGIATGVSAHDRTHTILTAIDGKSTQDDIITPGHVFPIIANDGGVLARNGHTEASVEIAKLIGYNHAAVGCELVND--DGSMMRLPELLKFAEQHNIKLTTIDKLIRYIKKLS
3MIO Chain:A ((2-205))
-----------TRLDSVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYTSGYLCVPLDGAICDRLGLLPMY--------------TVTVDARNGIGTGISASDRATTMRLLADPTSVADDFTRPGHVVPLRAKDGGVLRRPGHTEAAVDLARMAGLQPAGAICEIVSQKDEGSMAHTDELRVFADEHGLALITIADLIEWRRKHE
General information:
TITO was launched using:
RESULT:
Template:
3MIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127360 for 1649 contacts (-77.2/contact) +
2D Compatibility (PS) -20852 + (NN) -6751 + (LL) 2024
1D Compatibility (HY) -12400 + (ID) 4550
Total energy: -169889.0 ( -103.03 by residue)
QMean score : 0.488
(partial model without unconserved sides chains):
PDB file :
Tito_3MIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MIO-query.scw
PDB file :
Tito_Scwrl_3MIO.pdb
: