Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKALIFTSLVVVVLIVVTFLYKNNETNDLQVVNVYSSRKEELVRTLFDEFTRNTGIKVRYIIDDYSQLLSRME-N--GSGTDVFLTADAVNLILAKKRGLLSQVNSEILKRAIPEKFRDSEGYWFGLTKRTRILVYNKESVDPKDLSTYEDLANKKWKGKILVRSSTSPYNRSLIAFMIANNGFEKTKEWVSGIVSNMARKPSGGDTNQIYAVAAGEGDIAIVNSYYFARILSSE-RENKKNVANKLGVFFPNHDSNGVMVNISGAAVTKNAKNRENAIALLEFLVSKQAQELYAKKNQEYPIIEGVEVSNILKFWGDYPQSDLPLSELEKHLFEAVMIADECKWK |
| 2PT1 Chain:A ((18-334)) | -----------------------------QQEINLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLARLWRAEEDGIFQPVQSEILETNVPEYLRSPDGMWFGFTKRARVIMYNKGKVKPEELSTYEELADPKWKGRVIIRSSSNEYNQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQK-AIAENVGVFFPNQEGRGTHVNVSGVGVVKTAPNREGAVKFIEFLVSEPAQAFLAQNNYEYPVLAGVPLNKSVASFGEFKSDTTSLDKLGPALAPATKIMNEAGWK |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PT1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175685 for 2710 contacts (-64.8/contact) +
2D Compatibility (PS) -34724 + (NN) -23064 + (LL) 3144
1D Compatibility (HY) -26400 + (ID) 6900
Total energy: -263629.0 ( -97.28 by residue)
QMean score : 0.586
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