Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIGSPVILAP-MSGVTDYPFRSIVKKLGASLLVSE-MIASRAM-IMQTRQSMQKAKVDELTAVQLAGCEPDIMAEAAKLNEDMGAKIIDINFGCPVKKVVNGYAGSALMRNEKKAAEIIEAVVKAVNVPVTVKIRTGWNNENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFIRNVKEQVKIPVIVNGDIKSLNDIQNALKESRADGVMIGRGAYGRPWLINQAINFLSGSEVSEPTASEKLSIILEHYDNILEYYGNDAGIKIA-RKHIGWYSSGFKNSSEFRVRV-NNMTDSMEVKEN-IVSFFSQV- |
1VHN Chain:A ((5-309)) | ---VKVGLAPMA-GYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE--VEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEKR--IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLKGARRFREKVMK--IEEVQILKEMFYNFIKEVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148717 for 2537 contacts (-58.6/contact) +
2D Compatibility (PS) -32621 + (NN) -12723 + (LL) 1028
1D Compatibility (HY) -16400 + (ID) 4800
Total energy: -214233.0 ( -84.44 by residue)
QMean score : 0.566
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