Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLIMNLVTKSAINFTAPAVLPNGEIVDDFCLSEHIKGKYAILLFYPLDFTFVCPTELISLNNRISEFAKRDVEVIGISVDSKFSHYQWRKTSVSNGGIGEISYTLVSDIKKSISRDYGVLYD-DSIALRATFVIDDKFIVRHQSINDMPLGRNMDEFIRIVDAIKHNEEHGEVCPAGWKKGKPAMQ----ASDEGVTDYLNSYSEEL
4K1F Chain:D ((8-194))
--------INSPAPSFEEVALMPNGSF-KKISLSSY-KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQFVEKHGEVCPANWKKGDPGMKPEPNASVEGYFSK--------
General information:
TITO was launched using:
RESULT:
Template:
4K1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103872 for 1379 contacts (-75.3/contact) +
2D Compatibility (PS) -19432 + (NN) -3311 + (LL) 1728
1D Compatibility (HY) -21600 + (ID) 4000
Total energy: -150487.0 ( -109.13 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_4K1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4K1F-query.scw
PDB file :
Tito_Scwrl_4K1F.pdb
: