Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMLDKENPIIKEFEEAGAILHGHFVLSSGLHSDTYTQCAKIFENPSRAMKVCELLANKIKKELNSSIDLILSPAIGGIIVGYEIGRQLRMKTMFCER--V-NG--------------KFELRRGFEIKRGEKILLVEDVITTGKSSLEAVKCAEDMGGKVVAEASLIKRNSE--TK--LPFSIISLLELSIKNYSEAELPEELKKLPIIKPGSREYLSNCSK
1ZN8 Chain:A ((5-180))
--------ELQLVEQR-IRSFPDFPTP-G---VVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLGCVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDA-LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQYE--------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZN8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114166 for 1195 contacts (-95.5/contact) +
2D Compatibility (PS) -16271 + (NN) 2660 + (LL) 2336
1D Compatibility (HY) -12000 + (ID) 1500
Total energy: -138941.0 ( -116.27 by residue)
QMean score : 0.499
(partial model without unconserved sides chains):
PDB file :
Tito_1ZN8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZN8-query.scw
PDB file :
Tito_Scwrl_1ZN8.pdb
: