Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRK-ERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
1TMM Chain:A ((3-142))
---AYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERAGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEM----------------
General information:
TITO was launched using:
RESULT:
Template:
1TMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96052 for 1051 contacts (-91.4/contact) +
2D Compatibility (PS) -14482 + (NN) -4746 + (LL) 1800
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -127080.0 ( -120.91 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1TMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TMM-query.scw
PDB file :
Tito_Scwrl_1TMM.pdb
: