Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHA-------KNG---YYDGITFHRVINDFMIQGGDPTA-TGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDI--ANTKVGPQDKPLHDVVIESIDVEE
4JJM Chain:B ((21-166))
------------------------GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAK----------------------------TEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPV------------
General information:
TITO was launched using:
RESULT:
Template:
4JJM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40090 for 985 contacts (-40.7/contact) +
2D Compatibility (PS) -14167 + (NN) -7246 + (LL) 3848
1D Compatibility (HY) -8400 + (ID) 3350
Total energy: -69405.0 ( -70.46 by residue)
QMean score : 0.479
(partial model without unconserved sides chains):
PDB file :
Tito_4JJM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JJM-query.scw
PDB file :
Tito_Scwrl_4JJM.pdb
: