Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTT--RNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWR--NSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
3UHF Chain:A ((24-271))
-AMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYT-NINALATGLFVPMVEEGIFEG-----DFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENI-DLKN---HKAKLHFYASSDVESLKNTAKIWLNL-----------
General information:
TITO was launched using:
RESULT:
Template:
3UHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -191661 for 2202 contacts (-87.0/contact) +
2D Compatibility (PS) -26253 + (NN) -8411 + (LL) 1320
1D Compatibility (HY) -21600 + (ID) 4150
Total energy: -250755.0 ( -113.88 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3UHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UHF-query.scw
PDB file :
Tito_Scwrl_3UHF.pdb
: