Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKVIGLTGGIASGKSTVSELLSVFGFKVVDADKAAREAVKKGSKGLAQVREVFGDEAIDENGEMNRRYMGDLVFNHPEKRLELNAIIHPIVRDIMEEEKQEYLKQGYNVIMDIPLLFENELENTVDEVWVVYTSESIQMDRLMQRNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGDKLELKQNLERLLEEEGYIEKPNYGEED
1JJV Chain:A ((1-205))
MTYIVGLTGGIGSGKTTIANLFTDLGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILN------RAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAE--QTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSA-----NFEQIQRIMNSQVSQQERLKWADDVINNDAELAQNLPHLQQKVLELHQFYLQQAENKN
General information:
TITO was launched using:
RESULT:
Template:
1JJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38852 for 1430 contacts (-27.2/contact) +
2D Compatibility (PS) -21211 + (NN) -7241 + (LL) 588
1D Compatibility (HY) -11200 + (ID) 3200
Total energy: -81116.0 ( -56.72 by residue)
QMean score : 0.525
(partial model without unconserved sides chains):
PDB file :
Tito_1JJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJV-query.scw
PDB file :
Tito_Scwrl_1JJV.pdb
: