Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---------------------------------------------------------MDTKQLKQDIIDYAYTI-----GIDSIGFTTADPFDELKQKLEAYHANGYASGFEESDIALRTEPKLSLPTARSIIAI-------AVGYPNKLKGAPKSVRGDR------------RGLFARASWGQD---YHTIMRKRLDMLAAFIESKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPDDPLLDSCGDCTICVDRCPTSALVGNGQLNSQKCISFLTQ---------TKGYMPDQYRYKIGNR---------LYGCDTCQQVCPKNRGINTEQDDII---LEPEILKPRLVPLLRMSNKEFKQTYGHLAGAWRGKKPIQRNAILALAHFNEVDAIPELKKVATTDERPMIRATAYWAIGQILGEEARDFINANYDQEDAEVQNEMIKGLDTRRE |
| 4U1D Chain:A ((9-496)) | FRPENAIKRADELISVGEKQAALQSLHDFITARRIRWATPSTVEPVVFKFLEIGVELKKGKLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESKIASEQTRADELQKQEID-AITSWLRFTWESYRAVLDLLRNNALLEITYSGVVKKTMHFCLKYQRKNEFKRLAEMLRQHLDAANYQQSKSGNNLVDLSDADTLQRYLDQRFQQVDVSVKLELWHEAYRSIEDVFHLMKISKR----APKPSTLANYYENLVKVFFVSGDPLLHTTAWKKFYKLY-STNPRATEEEFKTYSSTIFLSAISTQLDEIPSIGYDPHLRMYRLLNLDAKPTRKEMLQSIIEDESIYGKVDEELKELYDIIEVNFDVDTVKQQLENLLVKLSS--KTYFSQYIAPLR--DVIMRRVFVAASQKFTTVSQSELYKLATLPAP--LDLSAWDIEKSLLQAAVEDYVSITIDHESAKVTFAK--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -19238 for 2463 contacts (-7.8/contact) +
2D Compatibility (PS) -36266 + (NN) 2671 + (LL) 1364
1D Compatibility (HY) -13600 + (ID) 3500
Total energy: -68569.0 ( -27.84 by residue)
QMean score : 0.190
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