Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKEETELGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEELMNRLTGRRICESCGTTYHLVFNPPKVEGICDIDGGKLYQREDDNPETVANRLSVNIKQSKPILDFYDQKGVLKN-----IDGSKDISDVTKDVIDILDHL
4X8L Chain:B ((1-213))
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADA----MKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAALIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL---
General information:
TITO was launched using:
RESULT:
Template:
4X8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49120 for 1616 contacts (-30.4/contact) +
2D Compatibility (PS) -22507 + (NN) -10158 + (LL) 364
1D Compatibility (HY) -17200 + (ID) 5150
Total energy: -103771.0 ( -64.21 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4X8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X8L-query.scw
PDB file :
Tito_Scwrl_4X8L.pdb
: