Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVYLRKIDNQILHNKRISIKKGILEHFFDKANNQDEVDMSGILSNYNDKVSILLATDPRLGGGIKRIISAEVDKIKENRLDYELKIDDILLFTYISYKKYTLEIILLADTRYNVLNGLINNSKHLLVFSENETRTLDDGK---INESVRIDGGKNIILYGVPGSGKSYTLQRDYCNNSVVEKIV--FHPDYSYSDFVGQIMPSVDDSGIVSYKFNPGPFTNILKKAYHNPQTKHVLVIDEINRGNVPAIFGEIFQLLDRLKHDKDGFKKGSSEYAINNTDIANIVHNDKNASIRIPSNLWIVATMNTSDQNVFTLDTAFQRRFSMQLVENSFENVDDDFKNMKILDTDMTWQKFCTTINEKIAQNNEGLSSMEDKRFGVYFVSIDDLKSKE-NFAHKVIKYLWDDVFKFDRNIIFNTTKFNTLEAVVKNFIKEKDRTQFDVFSDDIKELLFNV |
| 4PEI Chain:A ((7-355)) | ----------QIQHIAIVGSVHGKYREMYRQLSEYEKST--------GKEISFVICT------GDMQTLRYEADLVYLKVPPKYKQMGDFHLYYEGKEKAPYLTLFI----------GGNHESSNVLLHLYNGGFVCFNMYYLGVCSCINING---LRIVGVSGIYKSFDEKKPYTYPPSPNDVVSLFHTR----NYVIQMLSNLSQSSQIDISLSHDWPQGIVMK------------------GN----YKQLYRFQPGFKKDGASL--GS---PINKVILNTL-----------KPKYWISGHMHC-EYHAEEGPTHFIALGKIGY-KNAISYLDLPLKQKTDLEYDKDW--VCNLIMTWPAFSNK-------AQFPDLSYSISELLSKRTKELDKKIIELWEKYIGL--KIIYDSDTFD-IQFTSRRFYIEKIYNELNI------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4PEI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 10100 for 2924 contacts (3.5/contact) +
2D Compatibility (PS) -35672 + (NN) -5418 + (LL) 5936
1D Compatibility (HY) -18800 + (ID) 3600
Total energy: -47454.0 ( -16.23 by residue)
QMean score : 0.192
|
|
|