Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEHNGHDKLNGVLRGFLGDSFTLDGKEGGLNMSKMLEFIKK--------------EKPKMNVLLMGATGVGKSSLINALFGKEITKTGVGKPITQHLEKY--IDEEKGLILWDTKGIEDKDYHDTMQSIKKEMEDSFKTLDEKEAIDVAYLCVKETSSRVQERERELLSFAKHWNIPTIVVFTHTQAEAGDAF-VQETKGIIDEEWGFKGFVRAYVRVNSVAFSFRGLKVPVEGLEELVDETKKCLSDAEKNKKRHFLSIQRVKIQERKQAMIEECKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKMNDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFIPVVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTIKKLKP |
1MKY Chain:A ((140-355)) | -----------------GEPIPVSAE-HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP------VDDEVFIDGRKYVFVDTAGL------------EKYSNY--RVVDSIEKADVVVIVLDATQ-GITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDY-SPLIFTSAD----KG-----WNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR----------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -58481 for 1346 contacts (-43.4/contact) +
2D Compatibility (PS) -20144 + (NN) -9697 + (LL) 10108
1D Compatibility (HY) -13200 + (ID) 1750
Total energy: -93164.0 ( -69.22 by residue)
QMean score : 0.527
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