Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MSSILTDFEPKFLSSDDLLNLYAEYCNGHYCDFKYKQRRLSDGNIQSHLYFKKDHFIHDYNGIETFKRFIAVKAYDVDNITSLALSNLLCEKFNLDILLTIEAMDKERALFFIRERKKRSKDISYQNIEYLEQMVSTDRAQIQKVSLSIMVFANSKKELDKKSIIVYNTLKKEGFSAVLESINMRPIFFSFFPERNFLNSRLRPQTSQNIAS-LIMFEKYQEGFKENS---WGDCPVSVFKNQNGSAHFFNFQAKQGKDKNDNVVGHTMIIGSTGSGKSTFISFLIANLLTKYDMSVV----ALDRMNGLEIMTDFFEGQYNTANTDGGFYINPFS--LKDSEENRQFLANWIKFMLNIDSDNQQDNKASQSIDKVIRDTYNYMGDQKNQINLLEIAKNL----GSSEQD-FNEILKSQGEK--IYFKNFQDCLDFSNSPLSVINMDA-----FANDKKLMGLIAMYLFHKLFFEAKEHNKPFFYSLMKLKTTLCIL |
| 4U6D Chain:A ((28-409)) | EGFPFILPKEKPNRPLSAAMQRNYDNY----------MAPRPENNELYTQFKYTELKGF-DYNG------------HD-GTISRRDPSKVIYEN------------GKYYVWYTYRNTPTPPQGAKNSN----DTIPSADW------DLAEIWYATSK----------------DGFTWEEQG--------VAVPRPPKPNVGWRSVTTTDILKWKGKFYLYYQGFMEASGTRGDDCPVAVSYADSPDGPW--------TPHTEVVIPNGKKGEWDQYSIHDPYPIVYKDKIYLYYKSDFDGDPNLVRMQGLAIAD----------NPLGPFKKSPLNPVINSGHETTLFPFKEGMAALVIRDGTEHN-------------TVQYAEDGVN-FNIASIVEFMPNAAGPYVADAFTNTKYGRGISWGISHFTNATTWDQNHAVLARFDCDLSLDVDDPHMKRLGTYFKPEFYYQMGLSKKQRERI--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 59788 for 2886 contacts (20.7/contact) +
2D Compatibility (PS) -37873 + (NN) -6178 + (LL) 10480
1D Compatibility (HY) -6400 + (ID) 3800
Total energy: 16017.0 ( 5.55 by residue)
QMean score : 0.066
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