Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MLEIDN---QTPLESDFLLLEKIADVLASTQIIELVLVSDETMREINRDLRDCDYATDVLSFPLEAIPHTPLGSVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHEKDKGEQRQ--KEGELIKAFDLPLSLIERTQEC-
1M4R Chain:A ((38-179))
SHCRLDKSNFQQPYITNRTFMLAKEASL---ADNNTDVRLIGEKLFHGVSMSE-RCYLMKQVLNFTLEEV----LFPQSDRFQPYMQEVVPFLARLSNRLSTCHIEGDDLHIQRNVQKLKDTVKKLGESGEIKAIGELDLLFMSLRNACI
General information:
TITO was launched using:
RESULT:
Template:
1M4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19444 for 966 contacts (-20.1/contact) +
2D Compatibility (PS) -13702 + (NN) 569 + (LL) 428
1D Compatibility (HY) -3600 + (ID) 1100
Total energy: -36849.0 ( -38.15 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_1M4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M4R-query.scw
PDB file :
Tito_Scwrl_1M4R.pdb
: