Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTYNVAIVGASGAVGQELIKGLENSFFPIKKFVPLASA-RSAGKKIRAF-----NK-------DYEILETTHEVFEKEEIDIAFFSAGGSVSEEFAISASK-TALVIDNTSFFRLNKDVPLVVPEINAQEIFN---------APLNIIANPNCSTIQMTQILNPLHLHFKIKSVIVSTYQAVSGAGNKGIESLKNELKTALEHLEKDPAIDLNQVLQAGAFAYPIAFNAIAHIDTFKENGYTKEELKMVHETHKIMGV---------DFPISATCVRVPVLRSHSESLSIAFEKEFDLKEVYEVLKNAPSVVVCDDP---SH------NLYPTPL-K-AS-HTDSVFIGRLRKDLFDKKTLHGFCVADQLRVGAATNALKIALHYIKNA |
| 1YS4 Chain:A ((7-352)) | -MKIKVGVLGATGSVGQRFVQLLAD--HPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPS------------------------------MAILDNLIPFIK--------NEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNGMSIVVGRIRKDPI--FDVKYTALEHNTIRGAAGASVLNAEYFVKKY |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155670 for 2628 contacts (-59.2/contact) +
2D Compatibility (PS) -31514 + (NN) -7468 + (LL) 3064
1D Compatibility (HY) -16400 + (ID) 5050
Total energy: -213038.0 ( -81.06 by residue)
QMean score : 0.346
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