Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFSIGEFSELVGIPSSTLRFYEKEGLITP-DRDKNNLRTYSEEDANWLKFLLHLKGAGLSIEELKQYT-IWRTAGDSTISERLNMLKEKKIVLEQEIENLQKDLDTVVRKIGIYEEKVAKLDV
1JBG Chain:A ((2-107))
-KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS-----------------
General information:
TITO was launched using:
RESULT:
Template:
1JBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29557 for 603 contacts (-49.0/contact) +
2D Compatibility (PS) -11369 + (NN) -7203 + (LL) 2048
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -53981.0 ( -89.52 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_1JBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JBG-query.scw
PDB file :
Tito_Scwrl_1JBG.pdb
: