Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKSVPHISVIMVNHDATNYPEFHLPAGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLTKRCIFVKAPNGEIIGTAMLWDGNTF---GKIESRIHWVAVLDSHGGKGIAKALLSKILGLNKS--KFVYLTTQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
1WWZ Chain:A ((1-157))
MDEIKIEKLK----KLDKKALNELIDVYMSGY-----------------EGLEEYGGEGRDYARNYIKWCWKKASDGFFVAKV-GDKIVGFIVCDKDWFSKYEGRIVGAIHEFVVDKKFQGKGIGRKLLITCLDFLGKYNDTIELWVGEKNYGAMNLYEKFGFKKV--GKSGIWVRMIKRQ------------------
General information:
TITO was launched using:
RESULT:
Template:
1WWZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66389 for 1136 contacts (-58.4/contact) +
2D Compatibility (PS) -16705 + (NN) -5215 + (LL) 3968
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -92741.0 ( -81.64 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1WWZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WWZ-query.scw
PDB file :
Tito_Scwrl_1WWZ.pdb
: